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Preheat your oven to 425°F (220°C) and bring a pot of water (enough to cover the bell peppers) to a boil.
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Wash the bell peppers, cut off the tops, and scoop out the insides. If needed, slice a small part off the bottom of the peppers so they will stand upright. (NOTE: Chop the extra bell pepper tops to cook later with the onion – discard the stem.)
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Blanch the bell peppers for 5 minutes to slightly soften. (Alternative, you can roast the peppers for 20 minutes to soften).
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Set the softened peppers into a lightly oiled baking dish.
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Heat the oil in a large pan to medium heat and add the onions, chopped pepper tops, and jalapeno (if using). Cook for 5 minutes to soften.
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Add the garlic and cook 1 minute, or until the garlic becomes fragrant.
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Add the ground beef and cook 5-6 minutes, breaking apart as you go, until cooked through.
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Add the fire roasted tomatoes, seasonings, and cooked rice. Stir together and remove from heat.
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Stir in half of the shredded cheese until incorporated.
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Stuff each pepper with the meat filling mixture, then top each with the remaining shredded cheese.
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Roast the stuffed peppers for 15-20 minutes, or until the peppers are tender to your preference, and the cheese is nice and bubbly.
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Cool slightly, garnish, and serve.